Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX98583.1Hypothetical protein; Psort location: Extracellular, score: 9.64. (575 aa)    
Predicted Functional Partners:
EKX98584.1
Hypothetical protein.
       0.773
EKX98581.1
Transcriptional regulatory protein RprY; KEGG: npu:Npun_F5788 4.9e-33 two component transcriptional regulator K11329; Psort location: Cytoplasmic, score: 9.97.
       0.481
EKX98582.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: pru:PRU_0614 2.0e-210 rprX; sensor histidine kinase RprX; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR; Psort location: CytoplasmicMembrane, score: 7.88.
       0.481
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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