Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX98341.1Sigma-70 region 2; KEGG: reh:H16_A2563 2.4e-15 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily. (189 aa)    
Predicted Functional Partners:
EKX98340.1
Hypothetical protein.
       0.825
EKX98342.1
Hypothetical protein.
       0.825
EKY03086.1
Sigma-70 region 2; KEGG: reh:H16_A2563 2.7e-16 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.26; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.756
EKY02028.1
Sigma-70 region 2; KEGG: bpu:BPUM_0902 5.4e-11 sigM; RNA polymerase sigma factor SigM K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.742
EKX99571.1
Sigma-70 region 2; KEGG: reh:H16_A1096 5.8e-14 rpoE3; DNA-directed RNA polymerase sigma subunit (RpoE,sigma24) K03088; Psort location: CytoplasmicMembrane, score: 9.82; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.733
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.541
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.533
EKX98339.1
Hypothetical protein.
       0.532
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.509
EKX98338.1
Hypothetical protein; KEGG: bpb:bpr_I0544 6.9e-05 lyc25E; lysozyme Lyc25E.
   
   0.422
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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