Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EKX98348.1Signal peptidase I; KEGG: pmz:HMPREF0659_A5068 3.9e-182 lepB; signal peptidase I K03100; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the peptidase S26 family. (481 aa)    
Predicted Functional Partners:
EKX98349.1
WbqC-like protein; Psort location: Cytoplasmic, score: 8.96.
 
     0.851
EKY00009.1
Outer membrane protein, OMP85 family; KEGG: apb:SAR116_0511 7.4e-16 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
  
  
 0.730
EKY00516.1
Putative RIP metalloprotease RseP; KEGG: pru:PRU_2924 1.1e-172 putative membrane-associated zinc metalloprotease; K11749 regulator of sigma E protease; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.685
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
  
 
 0.682
yidC
Membrane protein insertase, YidC/Oxa1 family domain protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins.
  
  
 0.680
EKY03891.1
Outer membrane assembly lipoprotein YfiO; KEGG: cco:CCC13826_1959 6.5e-07 tRNA (guanine-N(1)-)-methyltransferase K05807.
  
  
 0.660
secD
Export membrane protein SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
 
  
 0.657
EKX98347.1
Dihydrodipicolinate reductase; KEGG: pmz:HMPREF0659_A5067 1.3e-96 dapB; dihydrodipicolinate reductase K00215; Psort location: Cytoplasmic, score: 9.26; Belongs to the DapB family.
  
    0.657
EKX99532.1
Zinc ribbon domain protein; KEGG: rba:RB6605 1.7e-14 phospholipase C-beta-2; Psort location: Cytoplasmic, score: 8.96.
  
     0.654
EKY03090.1
Tetratricopeptide repeat protein.
  
     0.636
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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