STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX97860.1Hypothetical protein; KEGG: apb:SAR116_2008 2.8e-05 secretion protein HlyD. (297 aa)    
Predicted Functional Partners:
EKX97862.1
Hypothetical protein; KEGG: cco:CCC13826_0688 0.0034 L-seryl-tRNA(sec) selenium transferase; Psort location: Cytoplasmic, score: 8.96.
 
  0.981
EKX97859.1
KEGG: bra:BRADO7121 9.2e-87 ABC transporter permease ATP-binding protein K13926; Psort location: CytoplasmicMembrane, score: 7.88.
 
  
 0.961
EKX97857.1
ABC-2 type transporter; KEGG: bbt:BBta_3660 6.9e-30 ABC transporter permease ATP-binding protein K13926; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.959
EKX97858.1
Putative ABC transporter; KEGG: har:HEAR2591 2.2e-31 rbbA; ribosome-associated ATPase K13926; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.959
EKY03981.1
Outer membrane efflux protein; KEGG: dba:Dbac_2651 0.0034 CheA signal transduction histidine kinase; K03407 two-component system, chemotaxis family, sensor kinase CheA; Psort location: OuterMembrane, score: 9.92.
 
 0.865
EKY03980.1
RND transporter, HAE1/HME family, permease protein; KEGG: ddd:Dda3937_02820 4.5e-72 yegN, mdtB; acriflavin resistance plasma membrane protein K07788; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
  
 0.827
EKX97861.1
KEGG: bld:BLi02836 2.2e-08 adaA; AdaA; K13530 AraC family transcriptional regulator, regulatory protein of adaptative response / methylphosphotriester-DNA alkyltransferase methyltransferase; Psort location: Cytoplasmic, score: 9.26.
       0.676
EKY02896.1
Efflux transporter, outer membrane factor lipoprotein, NodT family; KEGG: ddd:Dda3937_01226 3.5e-28 outer membrane protein.
  
  0.621
EKY02840.1
Outer membrane efflux protein.
  
  0.620
EKY00080.1
Outer membrane efflux protein.
   
  0.568
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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