Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX97265.1Hypothetical protein. (533 aa)    
Predicted Functional Partners:
EKX97264.1
Transporter, major facilitator family protein.
       0.697
EKX97266.1
Sedoheptulose 7-phosphate isomerase.
       0.687
EKX97267.1
ROK family protein.
       0.682
EKX97268.1
Glycosyl hydrolase family 2, sugar binding domain protein; Belongs to the glycosyl hydrolase 2 family.
       0.521
rpsH
Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family.
    
   0.520
EKX97262.1
Alpha-galactosidase; Overlaps another CDS with the same product name.
       0.405
EKX97263.1
Alpha-galactosidase; Overlaps another CDS with the same product name.
       0.405
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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