Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EKX96671.1Hypothetical protein; KEGG: apb:SAR116_0647 1.2e-22 ABC-type transport system involved in resistance to organic solvents K02066; Psort location: CytoplasmicMembrane, score: 10.00. (248 aa)    
Predicted Functional Partners:
EKX96672.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2909 3.3e-43 ABC transporter component K02065; Psort location: CytoplasmicMembrane, score: 7.88.
 
 0.999
EKX98130.1
Hypothetical protein; KEGG: bba:Bd3413 0.0013 ABC transporter substrate binding protein K02067; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.992
EKX96670.1
ABC transporter, ATP-binding protein; KEGG: pmz:HMPREF0659_A6183 1.9e-109 lptB; lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861; Psort location: Cytoplasmic, score: 9.12.
 
  
  0.834
EKX97097.1
Permease, YjgP/YjgQ family; KEGG: hip:CGSHiEE_03515 0.00018 leucyl aminopeptidase K11720; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.555
EKX99867.1
Permease, YjgP/YjgQ family; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.490
EKY00009.1
Outer membrane protein, OMP85 family; KEGG: apb:SAR116_0511 7.4e-16 surface antigen D15 K07277; Psort location: OuterMembrane, score: 10.00.
 
     0.477
EKX96669.1
Hypothetical protein.
       0.445
EKY01574.1
acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.418
EKX99504.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
  
    0.415
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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