STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX96672.1ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2909 3.3e-43 ABC transporter component K02065; Psort location: CytoplasmicMembrane, score: 7.88. (258 aa)    
Predicted Functional Partners:
EKX96671.1
Hypothetical protein; KEGG: apb:SAR116_0647 1.2e-22 ABC-type transport system involved in resistance to organic solvents K02066; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.999
EKX98130.1
Hypothetical protein; KEGG: bba:Bd3413 0.0013 ABC transporter substrate binding protein K02067; Psort location: CytoplasmicMembrane, score: 9.82.
 
 0.986
EKX97859.1
KEGG: bra:BRADO7121 9.2e-87 ABC transporter permease ATP-binding protein K13926; Psort location: CytoplasmicMembrane, score: 7.88.
   
 
0.923
EKY00587.1
Efflux ABC transporter, permease protein; KEGG: gme:Gmet_3036 4.1e-36 hypothetical protein; K05685 macrolide transport system ATP-binding/permease protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
      0.701
EKX96670.1
ABC transporter, ATP-binding protein; KEGG: pmz:HMPREF0659_A6183 1.9e-109 lptB; lipopolysaccharide ABC transporter, ATP-binding protein LptB K06861; Psort location: Cytoplasmic, score: 9.12.
 
    
0.693
cysS
cysteine--tRNA ligase; KEGG: pmz:HMPREF0659_A6358 4.7e-225 cysS; cysteine--tRNA ligase K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.596
EKX98456.1
KEGG: rxy:Rxyl_0185 3.6e-53 ABC transporter related; K11085 ATP-binding cassette, subfamily B, bacterial MsbA; Psort location: CytoplasmicMembrane, score: 10.00.
 
    
0.503
rpsI
Ribosomal protein S9; KEGG: apb:SAR116_0492 2.7e-25 ribosomal protein S9 K02996; Psort location: Cytoplasmic, score: 9.26; Belongs to the universal ribosomal protein uS9 family.
  
     0.481
nuoA
NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be a menaquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family.
   
    0.447
EKY03516.1
Putative cell division ATP-binding protein FtsE; KEGG: cch:Cag_1444 3.0e-40 ATPase K09812; Psort location: CytoplasmicMembrane, score: 7.88.
  
  
 
0.444
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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