STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX96446.1S23 ribosomal protein; KEGG: rrs:RoseRS_4428 1.1e-07 glutamine--scyllo-inositol transaminase; Psort location: Cytoplasmic, score: 8.96. (173 aa)    
Predicted Functional Partners:
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.651
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
       0.571
EKX99211.1
KEGG: shn:Shewana3_3590 1.3e-18 single-strand binding protein K03111; Psort location: Cytoplasmic, score: 9.97.
   
    0.462
EKY01815.1
KEGG: apb:SAR116_0616 1.4e-33 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 8.96.
  
  
 0.457
EKX97489.1
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 6.8e-17 possible DNA uptake protein, ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.448
EKY03547.1
Hypothetical protein.
   
  
 0.441
EKX98353.1
Hypothetical protein; Psort location: OuterMembrane, score: 9.49.
   
  
 0.441
EKX96221.1
Response regulator receiver domain protein; KEGG: dfe:Dfer_0792 2.5e-148 histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82.
     
 0.406
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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