STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX96221.1Response regulator receiver domain protein; KEGG: dfe:Dfer_0792 2.5e-148 histidine kinase; Psort location: CytoplasmicMembrane, score: 9.82. (1319 aa)    
Predicted Functional Partners:
EKY01437.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: dfe:Dfer_1574 2.4e-80 histidine kinase; Psort location: CytoplasmicMembrane, score: 9.99.
 
0.998
EKX99725.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: aci:ACIAD0595 3.8e-11 putative sensory transduction histidine kinase K00936; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.992
EKY02829.1
Response regulator receiver domain protein.
 
0.991
EKY03884.1
Pyruvate synthase; KEGG: pmz:HMPREF0659_A5561 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 8.96.
  
 0.944
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.928
ribBA
3,4-dihydroxy-2-butanone-4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.924
EKX97115.1
Hypothetical protein.
  
 0.913
EKX98582.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: pru:PRU_0614 2.0e-210 rprX; sensor histidine kinase RprX; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR; Psort location: CytoplasmicMembrane, score: 7.88.
  
 0.902
EKY02862.1
ISSpo3, transposase family protein.
  
 0.901
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.895
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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