STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EKX96132.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.96. (418 aa)    
Predicted Functional Partners:
EKX96131.1
D-Ala-D-Ala dipeptidase; Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide.
       0.781
EKY04279.1
Hypothetical protein; KEGG: edi:EDI_341030 6.1e-15 intracellular protein transport protein USO1; Psort location: Cytoplasmic, score: 8.96.
  
     0.619
EKY02891.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.96.
  
     0.576
EKX99203.1
O-succinylbenzoate synthase; KEGG: pru:PRU_1683 3.1e-111 menC; O-succinylbenzoic acid synthetase K02549; Psort location: Cytoplasmic, score: 8.96.
  
     0.552
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
  
  
 0.542
EKX99624.1
Hypothetical protein; KEGG: sde:Sde_2004 6.3e-06 DNA helicase/exodeoxyribonuclease V, subunit B; Psort location: Cytoplasmic, score: 8.96.
  
     0.541
EKX99623.1
UvrD/REP helicase.
  
     0.491
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.479
EKY00544.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
   
    0.476
EKX97287.1
Hypothetical protein.
  
     0.474
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.