Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
EKX96146.1TonB-dependent receptor; KEGG: shn:Shewana3_2312 6.3e-16 1-(5-phosphoribosyl)-5- K01814; Psort location: OuterMembrane, score: 10.00. (978 aa)    
Predicted Functional Partners:
EKX96147.1
Hypothetical protein.
       0.635
EKX96148.1
Heparinase II/III-like protein.
       0.620
EKX96145.1
KEGG: coc:Coch_0690 2.0e-98 acid phosphatase K09474; Psort location: Periplasmic, score: 10.00.
       0.543
EKX96149.1
Glycosyl hydrolase, family 88; KEGG: rle:pRL120662 5.0e-47 ugl; putative unsaturated glucuronyl hydrolase; K01238; Psort location: Cytoplasmic, score: 9.26.
       0.510
EKY03811.1
Peptidase, M56 family; KEGG: scl:sce7487 9.4e-07 ftsI3; penicillin-binding transpeptidase; Psort location: CytoplasmicMembrane, score: 10.00.
   
  0.464
EKY04272.1
KEGG: pmz:HMPREF0659_A6751 1.5e-246 peptidase, S9A/B/C family, catalytic domain protein K01278; Psort location: Cytoplasmic, score: 9.26.
  
     0.450
EKY04538.1
TonB-dependent receptor.
  
     0.442
EKX97251.1
Peptidase, S9A/B/C family, catalytic domain protein; KEGG: srm:SRM_02977 5.7e-94 DPP4; dipeptidyl peptidase IV.
  
     0.421
Your Current Organism:
Prevotella saccharolytica
NCBI taxonomy Id: 1127699
Other names: P. saccharolytica F0055, Prevotella saccharolytica F0055, Prevotella saccharolytica str. F0055, Prevotella saccharolytica strain F0055
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