STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UHOR_12016Reverse transcriptase Ty1/copia-type domain-containing protein. (302 aa)    
Predicted Functional Partners:
UHOR_07615
Probable Chromatin assembly factor 1 subunit c.
    
 0.547
UHOR_04124
Related to RFA2-DNA replication factor A, 36 kDa subunit.
    
  0.545
UHOR_14943
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.519
UHOR_13437
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.516
UHOR_14792
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.503
UHOR_06167
Uncharacterized protein.
  
     0.502
UHOR_08486
Related to retrotransposon HobS hobase.
  
     0.498
UHOR_03412
Conserved uncharacterized protein.
  
     0.497
UHOR_00833
Uncharacterized protein.
  
     0.495
UHOR_16037
Reverse transcriptase Ty1/copia-type domain-containing protein.
  
     0.488
Your Current Organism:
Ustilago hordei
NCBI taxonomy Id: 1128400
Other names: U. hordei Uh4857-4, Ustilago hordei Uh4857-4
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