STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UHOR_01729Velvet domain-containing protein. (468 aa)    
Predicted Functional Partners:
UHOR_05848
Probable nitrate reductase.
    
 0.761
UHOR_02592
Probable cytochrome b5; Belongs to the cytochrome b5 family.
    
 0.761
UHOR_08698
Related to ribosomal protein YmS18, mitochondrial.
    
  0.669
UHOR_06929
Related to MRP4-mitochondrial ribosomal protein, small subunit; Belongs to the universal ribosomal protein uS2 family.
   
  0.668
UHOR_03309
Related to MRPS9-mitochondrial ribosomal protein, small subunit.
    
  0.667
UHOR_06209
Related to MRPS28-mitochondrial ribosomal protein, small subunit.
   
  0.667
UHOR_00376
Uncharacterized protein.
    
  0.667
UHOR_08929
Related to MRP2-mitochondrial ribosomal protein, small subunit.
    
  0.666
UHOR_15048
Related to RSM10-mitochondrial ribosomal protein, small subunit.
    
  0.666
UHOR_08390
MRP-S28 domain-containing protein.
    
  0.666
Your Current Organism:
Ustilago hordei
NCBI taxonomy Id: 1128400
Other names: U. hordei Uh4857-4, Ustilago hordei Uh4857-4
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