STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD43086.1Uncharacterized protein YrrD, contains PRC-barrel domain. (278 aa)    
Predicted Functional Partners:
SDD43111.1
Hypothetical protein.
  
    0.670
SDD43842.1
Hypothetical protein.
  
     0.610
vanW_2
Vancomycin resistance protein YoaR, contains peptidoglycan-binding and VanW domains.
       0.535
SDE55506.1
Tetraheme cytochrome c subunit of nitrate or TMAO reductase.
  
     0.523
yndE_3
Spore germination protein.
  
     0.494
SDE23416.1
Hypothetical protein.
  
     0.469
SDF05446.1
HutP protein.
 
     0.461
napC
Tetraheme cytochrome c subunit of nitrate or TMAO reductase.
  
     0.443
SDE55220.1
Fumarate reductase flavoprotein subunit.
  
     0.441
urdA
Fumarate reductase flavoprotein subunit.
  
     0.435
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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