STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yycF_1Two component transcriptional regulator, winged helix family. (232 aa)    
Predicted Functional Partners:
baeS_3
Two-component system, OmpR family, sensor histidine kinase BaeS.
 0.983
bvgS
PAS/PAC sensor hybrid histidine kinase.
 0.975
rpfC_1
Hypothetical protein.
0.975
phoR_9
His Kinase A (phospho-acceptor) domain-containing protein.
 0.975
kinA_7
PAS domain S-box-containing protein.
 
 0.958
fixL
PAS domain S-box-containing protein.
 
 
 0.949
pleC_2
Signal transduction histidine kinase.
 0.948
rpfC_2
Signal transduction histidine kinase.
 0.941
tmoS
PAS domain S-box-containing protein.
 
 
 0.929
baeS_1
Signal transduction histidine kinase.
 0.928
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.