STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoVB_2Stage V sporulation protein B. (551 aa)    
Predicted Functional Partners:
SDE59487.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.703
SDF31586.1
Putative sensory transduction regulator.
 
   
 0.698
SDE56497.1
Hypothetical protein.
  
     0.694
trmK
tRNA (adenine22-N1)-methyltransferase.
  
     0.682
glnA_1
Glutamine synthetase.
 
     0.681
sigH_2
RNA polymerase, sigma 30 subunit, SigH; Belongs to the sigma-70 factor family.
  
    0.671
SDF27688.1
Putative negative regulator of RcsB-dependent stress response.
  
     0.621
lptD_3
Lipopolysaccharide export system protein LptA.
  
     0.620
whiA
Hypothetical protein; Involved in cell division and chromosome segregation.
  
     0.618
SDE78655.1
Hypothetical protein.
  
     0.614
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.