STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttrB_4Prokaryotic molybdopterin-containing oxidoreductase family, iron-sulfur binding subunit. (180 aa)    
Predicted Functional Partners:
SDE70983.1
Anaerobic selenocysteine-containing dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.924
SDE70940.1
Formate-dependent nitrite reductase, membrane component NrfD.
 
 
 0.877
SDE70688.1
Formate dehydrogenase subunit gamma.
  
 0.818
SDF27790.1
Formate dehydrogenase subunit gamma.
  
 0.818
ydhV_1
Aldehyde:ferredoxin oxidoreductase.
  
 0.805
ydhV_2
Aldehyde:ferredoxin oxidoreductase.
  
 0.805
pcrA_1
Tat (twin-arginine translocation) pathway signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.786
pcrA_2
Tat (twin-arginine translocation) pathway signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.786
ynfF_2
Tat (twin-arginine translocation) pathway signal sequence; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.775
psrA
Thiosulfate reductase / polysulfide reductase chain A; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.756
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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