SDE74860.1 protein (Sporomusa acidovorans) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDE74860.1

CO-methylating acetyl-CoA synthase precursor. (708 aa)

Predicted Functional Partners:

SDE55616.1

0.998

acsC_2

0.996

SDE74882.1

0.995

acsC_1

0.993

SDF24375.1

0.992

SDF24400.1

0.992

acsD_2

0.990

cooS2

0.988

acsD_1

0.986

cooS1

0.983

Your Current Organism:

Sporomusa acidovorans

NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDE55616.1	SDE74860.1	SAMN04488499_101624	SAMN04488499_1020106	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	CO-methylating acetyl-CoA synthase precursor.	0.998
SDE55616.1	SDE74882.1	SAMN04488499_101624	SAMN04488499_1020107	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	Ni-dependent carbon monoxide dehydrogenase precursor.	0.988
SDE55616.1	SDF24375.1	SAMN04488499_101624	SAMN04488499_103933	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	acetyl-CoA synthase.	0.998
SDE55616.1	SDF24400.1	SAMN04488499_101624	SAMN04488499_103934	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	acetyl-CoA decarbonylase/synthase beta subunit.	0.998
SDE55616.1	acsC_1	SAMN04488499_101624	SAMN04488499_10515	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.	0.993
SDE55616.1	acsC_2	SAMN04488499_101624	SAMN04488499_1020105	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.	0.993
SDE55616.1	acsD_1	SAMN04488499_101624	SAMN04488499_10516	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	acetyl-CoA decarbonylase/synthase delta subunit.	0.985
SDE55616.1	acsD_2	SAMN04488499_101624	SAMN04488499_1020102	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein small subunit precursor /acetyl-CoA decarbonylase/synthase delta subunit.	0.985
SDE55616.1	cooS1	SAMN04488499_101624	SAMN04488499_10745	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	Carbon-monoxide dehydrogenase catalytic subunit.	0.980
SDE55616.1	cooS2	SAMN04488499_101624	SAMN04488499_105110	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	Carbon-monoxide dehydrogenase catalytic subunit.	0.980
SDE74860.1	SDE55616.1	SAMN04488499_1020106	SAMN04488499_101624	CO-methylating acetyl-CoA synthase precursor.	CO dehydrogenase/acetyl-CoA synthase complex beta subunit.	0.998
SDE74860.1	SDE74882.1	SAMN04488499_1020106	SAMN04488499_1020107	CO-methylating acetyl-CoA synthase precursor.	Ni-dependent carbon monoxide dehydrogenase precursor.	0.995
SDE74860.1	SDF24375.1	SAMN04488499_1020106	SAMN04488499_103933	CO-methylating acetyl-CoA synthase precursor.	acetyl-CoA synthase.	0.992
SDE74860.1	SDF24400.1	SAMN04488499_1020106	SAMN04488499_103934	CO-methylating acetyl-CoA synthase precursor.	acetyl-CoA decarbonylase/synthase beta subunit.	0.992
SDE74860.1	acsC_1	SAMN04488499_1020106	SAMN04488499_10515	CO-methylating acetyl-CoA synthase precursor.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.	0.993
SDE74860.1	acsC_2	SAMN04488499_1020106	SAMN04488499_1020105	CO-methylating acetyl-CoA synthase precursor.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein large subunit precursor.	0.996
SDE74860.1	acsD_1	SAMN04488499_1020106	SAMN04488499_10516	CO-methylating acetyl-CoA synthase precursor.	acetyl-CoA decarbonylase/synthase delta subunit.	0.986
SDE74860.1	acsD_2	SAMN04488499_1020106	SAMN04488499_1020102	CO-methylating acetyl-CoA synthase precursor.	CO-methylating acetyl-CoA synthase corrinoid iron-sulfur protein small subunit precursor /acetyl-CoA decarbonylase/synthase delta subunit.	0.990
SDE74860.1	cooS1	SAMN04488499_1020106	SAMN04488499_10745	CO-methylating acetyl-CoA synthase precursor.	Carbon-monoxide dehydrogenase catalytic subunit.	0.983
SDE74860.1	cooS2	SAMN04488499_1020106	SAMN04488499_105110	CO-methylating acetyl-CoA synthase precursor.	Carbon-monoxide dehydrogenase catalytic subunit.	0.988