STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE86559.1Hypothetical protein. (288 aa)    
Predicted Functional Partners:
frzE_2
Two-component system, chemotaxis family, sensor kinase CheA.
   
 0.937
cheV_2
Two-component system, chemotaxis family, response regulator CheV.
 
 
 0.928
cheV_1
Two-component system, chemotaxis family, response regulator CheV.
 
 
 0.928
cheV_3
Chemotaxis signal transduction protein.
 
 
 0.911
rpfC_1
Hypothetical protein.
   
 0.896
bvgS
PAS/PAC sensor hybrid histidine kinase.
   
 0.879
rpfC_2
Signal transduction histidine kinase.
   
 0.874
cheY_13
Two-component system, chemotaxis family, response regulator CheY.
  
 
  0.850
cheC
Chemotaxis protein CheC.
 
 
 0.709
rsbV_2
Anti-sigma B factor antagonist.
 
     0.630
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.