STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdaC_2Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family. (238 aa)    
Predicted Functional Partners:
pgaC
Hyaluronan synthase.
 
 0.707
SDD42442.1
Glycosyltransferase, catalytic subunit of cellulose synthase and poly-beta-1,6-N-acetylglucosamine synthase.
  
 
 0.648
SDD78122.1
Hypothetical protein.
  
 
 0.648
epsE_1
Glycosyl transferase family 2.
  
 
 0.648
dacB_3
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6); Belongs to the peptidase S11 family.
  
  
 0.556
ydhD_2
Spore germination protein YaaH.
 
    
 0.517
chbP
Cellobiose phosphorylase.
     
 0.456
sunS_4
Tetratricopeptide repeat-containing protein.
  
 
 0.440
ydhD_1
Spore germination protein YaaH.
 
    
 0.412
sunS_3
TPR repeat-containing protein.
  
 
 0.409
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.