Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDD65932.1 | SDD74373.1 | SAMN04488499_10031 | SAMN04488499_1003230 | Nickel-dependent hydrogenase. | Hydrogenase large subunit. | 0.774 |
SDD65932.1 | SDF30252.1 | SAMN04488499_10031 | SAMN04488499_104241 | Nickel-dependent hydrogenase. | Nickel-dependent hydrogenase. | 0.771 |
SDD65932.1 | hoxG | SAMN04488499_10031 | SAMN04488499_102332 | Nickel-dependent hydrogenase. | Hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. | 0.754 |
SDD65932.1 | hypA | SAMN04488499_10031 | SAMN04488499_102619 | Nickel-dependent hydrogenase. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.898 |
SDD65932.1 | hypB | SAMN04488499_10031 | SAMN04488499_102618 | Nickel-dependent hydrogenase. | Hydrogenase nickel incorporation protein HypB. | 0.479 |
SDD65932.1 | hypC | SAMN04488499_10031 | SAMN04488499_106112 | Nickel-dependent hydrogenase. | Hydrogenase maturation protein HypC. | 0.704 |
SDD65932.1 | hypD | SAMN04488499_10031 | SAMN04488499_106111 | Nickel-dependent hydrogenase. | Hydrogenase maturation protein HypD. | 0.715 |
SDD65932.1 | hypF | SAMN04488499_10031 | SAMN04488499_106113 | Nickel-dependent hydrogenase. | Hydrogenase maturation protein, carbamoyltransferase HypF. | 0.647 |
SDD74373.1 | SDD65932.1 | SAMN04488499_1003230 | SAMN04488499_10031 | Hydrogenase large subunit. | Nickel-dependent hydrogenase. | 0.774 |
SDD74373.1 | hypA | SAMN04488499_1003230 | SAMN04488499_102619 | Hydrogenase large subunit. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.953 |
SDD74373.1 | hypB | SAMN04488499_1003230 | SAMN04488499_102618 | Hydrogenase large subunit. | Hydrogenase nickel incorporation protein HypB. | 0.750 |
SDD74373.1 | hypC | SAMN04488499_1003230 | SAMN04488499_106112 | Hydrogenase large subunit. | Hydrogenase maturation protein HypC. | 0.845 |
SDD74373.1 | hypD | SAMN04488499_1003230 | SAMN04488499_106111 | Hydrogenase large subunit. | Hydrogenase maturation protein HypD. | 0.850 |
SDD74373.1 | hypF | SAMN04488499_1003230 | SAMN04488499_106113 | Hydrogenase large subunit. | Hydrogenase maturation protein, carbamoyltransferase HypF. | 0.819 |
SDE94519.1 | hypA | SAMN04488499_102738 | SAMN04488499_102619 | Hydrogenase large subunit. | Hydrogenase-3 nickel incorporation protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.955 |
SDE94519.1 | hypB | SAMN04488499_102738 | SAMN04488499_102618 | Hydrogenase large subunit. | Hydrogenase nickel incorporation protein HypB. | 0.761 |
SDE94519.1 | hypC | SAMN04488499_102738 | SAMN04488499_106112 | Hydrogenase large subunit. | Hydrogenase maturation protein HypC. | 0.850 |
SDE94519.1 | hypD | SAMN04488499_102738 | SAMN04488499_106111 | Hydrogenase large subunit. | Hydrogenase maturation protein HypD. | 0.854 |
SDE94519.1 | hypF | SAMN04488499_102738 | SAMN04488499_106113 | Hydrogenase large subunit. | Hydrogenase maturation protein, carbamoyltransferase HypF. | 0.824 |
SDF30252.1 | SDD65932.1 | SAMN04488499_104241 | SAMN04488499_10031 | Nickel-dependent hydrogenase. | Nickel-dependent hydrogenase. | 0.771 |
page 1 of 5