STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pleD_1Diguanylate cyclase (GGDEF) domain-containing protein. (339 aa)    
Predicted Functional Partners:
rpfG_25
HD domain-containing protein.
 0.891
ycdT_2
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.882
rpfC_1
Hypothetical protein.
 
 0.874
rpfG_13
PAS domain S-box-containing protein/HDIG domain-containing protein.
 0.867
cph2_1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.854
rpfG_11
HDIG domain-containing protein.
 0.840
yeaP
Diguanylate cyclase (GGDEF) domain-containing protein.
  
  
  0.837
cph2_3
Diguanylate cyclase (GGDEF) domain-containing protein.
0.791
bvgS
PAS/PAC sensor hybrid histidine kinase.
 0.790
SDE04345.1
PAS domain S-box-containing protein.
 
 0.784
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.