Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF05907.1 | SDF05951.1 | SAMN04488499_103153 | SAMN04488499_103155 | Histidine triad (HIT) family protein. | Hypothetical protein. | 0.606 |
SDF05907.1 | mtaB | SAMN04488499_103153 | SAMN04488499_103152 | Histidine triad (HIT) family protein. | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | 0.654 |
SDF05907.1 | prmA | SAMN04488499_103153 | SAMN04488499_103150 | Histidine triad (HIT) family protein. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.616 |
SDF05907.1 | rpsU | SAMN04488499_103153 | SAMN04488499_103154 | Histidine triad (HIT) family protein. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.624 |
SDF05951.1 | SDF05907.1 | SAMN04488499_103155 | SAMN04488499_103153 | Hypothetical protein. | Histidine triad (HIT) family protein. | 0.606 |
SDF05951.1 | argS | SAMN04488499_103155 | SAMN04488499_101054 | Hypothetical protein. | arginyl-tRNA synthetase. | 0.455 |
SDF05951.1 | mtaB | SAMN04488499_103155 | SAMN04488499_103152 | Hypothetical protein. | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | 0.476 |
SDF05951.1 | prmA | SAMN04488499_103155 | SAMN04488499_103150 | Hypothetical protein. | Ribosomal protein L11 methyltransferase; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.544 |
SDF05951.1 | rplS | SAMN04488499_103155 | SAMN04488499_1001370 | Hypothetical protein. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.473 |
SDF05951.1 | rplU | SAMN04488499_103155 | SAMN04488499_102021 | Hypothetical protein. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.499 |
SDF05951.1 | rpmE | SAMN04488499_103155 | SAMN04488499_101822 | Hypothetical protein. | Large subunit ribosomal protein L31; Binds the 23S rRNA. | 0.590 |
SDF05951.1 | rpmF | SAMN04488499_103155 | SAMN04488499_1001393 | Hypothetical protein. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.509 |
SDF05951.1 | rpsO | SAMN04488499_103155 | SAMN04488499_1001275 | Hypothetical protein. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.740 |
SDF05951.1 | rpsU | SAMN04488499_103155 | SAMN04488499_103154 | Hypothetical protein. | Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family. | 0.979 |
argS | SDF05951.1 | SAMN04488499_101054 | SAMN04488499_103155 | arginyl-tRNA synthetase. | Hypothetical protein. | 0.455 |
argS | rplS | SAMN04488499_101054 | SAMN04488499_1001370 | arginyl-tRNA synthetase. | Large subunit ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.489 |
argS | rplU | SAMN04488499_101054 | SAMN04488499_102021 | arginyl-tRNA synthetase. | Large subunit ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.741 |
argS | rpmF | SAMN04488499_101054 | SAMN04488499_1001393 | arginyl-tRNA synthetase. | LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family. | 0.474 |
argS | rpsO | SAMN04488499_101054 | SAMN04488499_1001275 | arginyl-tRNA synthetase. | SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.530 |
mtaB | SDF05907.1 | SAMN04488499_103152 | SAMN04488499_103153 | Threonylcarbamoyladenosine tRNA methylthiotransferase MtaB. | Histidine triad (HIT) family protein. | 0.654 |
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