STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
norGGntR family transcriptional regulator, regulator for abcA and norABC. (484 aa)    
Predicted Functional Partners:
argO
L-lysine exporter family protein LysE/ArgO.
 
     0.701
SDE48820.1
Methyltransferase domain-containing protein.
   
 
 0.576
tyrB
Aromatic-amino-acid transaminase.
  
 0.551
trpA
Tryptophan synthase, alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
 
 0.524
ndhI_10
4Fe-4S binding domain-containing protein.
    
   0.523
mnmC
Heterodisulfide reductase subunit A.
    
   0.523
metH_5
5-methyltetrahydrofolate--homocysteine methyltransferase.
  
 
 0.520
SDF16215.1
methylmalonyl-CoA epimerase.
  
 
 0.519
pheA
Prephenate dehydratase.
    
 0.513
SDE17041.1
Prephenate dehydrogenase.
    
 0.513
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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