STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF22418.1Protein of unknown function. (220 aa)    
Predicted Functional Partners:
SDF22525.1
Hypothetical protein.
 
     0.853
SDF22499.1
SH3 domain-containing protein.
 
  
0.813
SDF52449.1
Uncharacterized protein YjbI, contains pentapeptide repeats.
   
 
 0.789
ptlG
Type IV secretion system protein VirB10.
    
 
 0.782
SDF19574.1
Acetyltransferase (GNAT) domain-containing protein.
  
     0.770
SDD46834.1
Cyclic nucleotide-binding domain-containing protein.
  
     0.769
SDF07321.1
Cyclic nucleotide-binding domain-containing protein.
  
     0.768
SDE60425.1
BofC C-terminal domain-containing protein.
  
     0.766
SDD81769.1
Exopolysaccharide biosynthesis protein YbjH.
  
     0.760
SDE23166.1
Yip1 domain-containing protein.
  
     0.728
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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