STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gsiD_1Peptide/nickel transport system permease protein. (278 aa)    
Predicted Functional Partners:
oppD_1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.995
oppF_1
Peptide/nickel transport system ATP-binding protein.
 
 0.991
oppD_4
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.985
nikB_1
ABC-type dipeptide/oligopeptide/nickel transport system, permease component.
 
 0.985
gsiA_1
Nickel transport system ATP-binding protein.
 
 0.981
oppD_3
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.980
oppF_4
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 0.974
oppF_3
Oligopeptide transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.972
oppF_2
Oligopeptide transport system ATP-binding protein.
 
 0.970
oppD_2
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 0.963
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.