STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF33026.1Transposase zinc-binding domain-containing protein. (383 aa)    
Predicted Functional Partners:
SDF33000.1
Phage integrase family protein.
 
     0.942
rpfC_1
Hypothetical protein.
   
 0.708
bvgS
PAS/PAC sensor hybrid histidine kinase.
   
 0.694
SDE04345.1
PAS domain S-box-containing protein.
    
 0.629
frzE_2
Two-component system, chemotaxis family, sensor kinase CheA.
   
 0.616
SDD45985.1
Flagellar FliL protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
 
 0.615
cheC
Chemotaxis protein CheC.
    
   0.612
motB
Chemotaxis protein MotB.
    
   0.612
rpfG_26
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.609
yedQ
Diguanylate cyclase (GGDEF) domain-containing protein.
    
 0.609
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.