STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF47315.1Trimethylamine:corrinoid methyltransferase; Belongs to the trimethylamine methyltransferase family. (467 aa)    
Predicted Functional Partners:
metH_4
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
  
 0.782
SDF89278.1
Hypothetical protein.
  
     0.768
yqcE
Predicted arabinose efflux permease, MFS family.
 
     0.762
nqrF_1
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.738
acsE_1
5-methyltetrahydrofolate--homocysteine methyltransferase.
 
     0.687
nqrF_4
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.665
nqrF_2
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.659
nqrF_6
Uncharacterized 2Fe-2 and 4Fe-4S clusters-containing protein, contains DUF4445 domain.
 
     0.623
SDE47929.1
Methanol:corrinoid methyltransferase.
  
  
  0.613
apc3
Hydantoinase/oxoprolinase.
  
     0.613
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.