STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abrB_1Transcriptional pleiotropic regulator of transition state genes. (84 aa)    
Predicted Functional Partners:
spo0A
Two-component system, response regulator, stage 0 sporulation protein A; May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process.
  
   
 0.783
spoIIID
Putative DeoR family transcriptional regulator, stage III sporulation protein D.
  
   
 0.769
spoIIAB_1
Stage II sporulation protein AB (anti-sigma F factor).
  
  
 0.763
gerBA_5
Spore germination protein KA.
  
   
 0.738
spoIVA
Stage IV sporulation protein A.
  
     0.737
yabP
Sporulation protein YqfC/sporulation protein YabP,TIGR02892.
  
   
 0.731
gerBA_2
Spore germination protein.
  
   
 0.717
SDD37197.1
Stage V sporulation protein AC.
  
     0.716
gerBA_1
Spore germination protein KA.
  
   
 0.716
gerBA_3
Spore germination protein KA.
  
   
 0.715
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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