Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDF77678.1 | SDF77697.1 | SAMN04488499_108110 | SAMN04488499_108111 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.773 |
SDF77678.1 | SDF77712.1 | SAMN04488499_108110 | SAMN04488499_108112 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDF77678.1 | SDF77735.1 | SAMN04488499_108110 | SAMN04488499_108113 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDF77678.1 | SDF77746.1 | SAMN04488499_108110 | SAMN04488499_108114 | Hypothetical protein. | Phage nucleotide-binding protein. | 0.773 |
SDF77678.1 | acpP | SAMN04488499_108110 | SAMN04488499_1001386 | Hypothetical protein. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.810 |
SDF77678.1 | fabZ | SAMN04488499_108110 | SAMN04488499_1004134 | Hypothetical protein. | 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.775 |
SDF77678.1 | lpxA | SAMN04488499_108110 | SAMN04488499_1004132 | Hypothetical protein. | acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.777 |
SDF77678.1 | lpxB | SAMN04488499_108110 | SAMN04488499_1004130 | Hypothetical protein. | lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.691 |
SDF77678.1 | pglD_1 | SAMN04488499_108110 | SAMN04488499_104929 | Hypothetical protein. | Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. | 0.777 |
SDF77678.1 | pglD_2 | SAMN04488499_108110 | SAMN04488499_101496 | Hypothetical protein. | Sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. | 0.777 |
SDF77697.1 | SDF77678.1 | SAMN04488499_108111 | SAMN04488499_108110 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.773 |
SDF77697.1 | SDF77712.1 | SAMN04488499_108111 | SAMN04488499_108112 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.793 |
SDF77697.1 | SDF77735.1 | SAMN04488499_108111 | SAMN04488499_108113 | Helicase conserved C-terminal domain-containing protein. | Hypothetical protein. | 0.934 |
SDF77697.1 | SDF77746.1 | SAMN04488499_108111 | SAMN04488499_108114 | Helicase conserved C-terminal domain-containing protein. | Phage nucleotide-binding protein. | 0.940 |
SDF77712.1 | SDF77678.1 | SAMN04488499_108112 | SAMN04488499_108110 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDF77712.1 | SDF77697.1 | SAMN04488499_108112 | SAMN04488499_108111 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.793 |
SDF77712.1 | SDF77735.1 | SAMN04488499_108112 | SAMN04488499_108113 | Hypothetical protein. | Hypothetical protein. | 0.809 |
SDF77712.1 | SDF77746.1 | SAMN04488499_108112 | SAMN04488499_108114 | Hypothetical protein. | Phage nucleotide-binding protein. | 0.805 |
SDF77735.1 | SDF77678.1 | SAMN04488499_108113 | SAMN04488499_108110 | Hypothetical protein. | Hypothetical protein. | 0.773 |
SDF77735.1 | SDF77697.1 | SAMN04488499_108113 | SAMN04488499_108111 | Hypothetical protein. | Helicase conserved C-terminal domain-containing protein. | 0.934 |
page 1 of 3