STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xreTranscriptional regulator, contains XRE-family HTH domain. (108 aa)    
Predicted Functional Partners:
spo0F
Two-component system, response regulator, stage 0 sporulation protein F.
    
 0.678
cheY_7
Two-component system, chemotaxis family, response regulator CheY.
    
 0.675
cinA_4
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.601
yrrB_2
Tetratricopeptide repeat-containing protein.
    
 0.568
yrrB_3
Tetratricopeptide repeat-containing protein.
    
 0.560
yrrB_1
Glycosyltransferase family 9 (heptosyltransferase).
    
 0.560
nadE_2
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.535
SDF14307.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.518
SDF76366.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.518
SDF88769.1
Diguanylate cyclase, GGDEF domain.
       0.510
Your Current Organism:
Sporomusa acidovorans
NCBI taxonomy Id: 112900
Other names: ATCC 49682, DSM 3132, S. acidovorans, strain Mol
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.