STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC38824.1Lipopolysaccharide export system permease protein. (362 aa)    
Predicted Functional Partners:
SMC38789.1
Lipopolysaccharide export system ATP-binding protein.
 
 
 0.997
SMC38768.1
LPS export ABC transporter protein LptC.
 
 
 0.985
SMC38892.1
Uncharacterized conserved protein, contains DUF3084 domain.
 
     0.919
SMC38985.1
LPS-assembly protein.
 
 
 0.910
SMC38780.1
Lipopolysaccharide export system protein LptA.
 
   
 0.892
SMC38761.1
KDO2-lipid IV(A) lauroyltransferase.
 
   
 0.870
SMC38566.1
Beta-barrel assembly machine subunit BamA.
 
   
 0.837
lpxB
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.833
lpxA
acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
     0.806
SMC38924.1
Hypothetical protein.
 
     0.804
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.