STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC48955.1Predicted Na+-dependent transporter. (334 aa)    
Predicted Functional Partners:
SMC49036.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
    0.603
SMC48948.1
DNA-binding transcriptional regulator, MarR family.
       0.516
SMC49047.1
RraA famliy.
       0.516
SMC56032.1
Heavy-metal-associated domain-containing protein.
 
     0.460
SMC32606.1
Transcriptional regulator, TetR family.
  
     0.424
SMD08853.1
Anaerobic ribonucleoside-triphosphate reductase.
  
     0.416
SMC46459.1
Hypothetical protein.
  
    0.404
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.