STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC49175.1DJ-1/PfpI family protein. (200 aa)    
Predicted Functional Partners:
SMC49183.1
4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis.
 
   
 0.780
SMC38555.1
RNA polymerase sporulation-specific sigma factor; Belongs to the sigma-70 factor family.
   
 
 0.768
SMC65538.1
RNA polymerase sigma factor for flagellar operon FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
   
 
 0.768
sigA
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.768
SMC49221.1
Nicotinamidase-related amidase.
 
    0.691
SMC32555.1
Transcriptional regulator, AraC family.
  
 
  0.574
SMC49165.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.522
SMD15856.1
AraC-type DNA-binding protein.
 
 
 0.468
SMC74767.1
Acetyltransferase (GNAT) domain-containing protein.
 
     0.439
SMC49194.1
DNA-binding transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
  
 0.437
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.