STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMC67424.1Ribosomal protein S18 acetylase RimI. (163 aa)    
Predicted Functional Partners:
SMC86734.1
Amino acid adenylation domain-containing protein/thioester reductase domain-containing protein; Belongs to the ATP-dependent AMP-binding enzyme family.
 
  
 0.718
SMC32437.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.545
SMC48824.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.545
SMC89790.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.545
SMC67434.1
Hypothetical protein.
       0.528
SMD17254.1
Ribosomal-protein-alanine N-acetyltransferase.
 
 
 0.507
SMC67401.1
Hypothetical protein.
       0.494
SMC67412.1
Hypothetical protein.
       0.494
SMC65578.1
Chemotaxis protein CheC.
    
   0.491
SMC39942.1
Protein N-acetyltransferase, RimJ/RimL family.
 
 
 0.468
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.