STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC95929.1PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein. (699 aa)    
Predicted Functional Partners:
SMC70974.1
PAS domain S-box-containing protein.
 0.995
SMC39192.1
Regulatory protein, luxR family.
  
 0.994
SMD12220.1
PAS domain S-box-containing protein.
 
 0.993
SMC97808.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.989
SMC50088.1
Signal transduction histidine kinase.
 
 0.982
SMD01027.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.982
SMD15527.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
0.982
SMC97919.1
PAS/PAC sensor hybrid histidine kinase.
 
 0.981
SMC34943.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.980
SMD04523.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.975
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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