STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC99890.1Outer membrane transport energization protein TonB. (235 aa)    
Predicted Functional Partners:
SMC99880.1
Outer membrane transport energization protein ExbD.
 
 
 0.967
SMC49995.1
Iron complex outermembrane recepter protein.
 
 
 0.957
SMC99885.1
Outer membrane transport energization protein ExbB.
 
 
 0.957
SMC99847.1
Outer membrane receptor proteins, mostly Fe transport.
 
 
 0.941
SMC49979.1
Biopolymer transport protein ExbD.
 
 
 0.930
SMD10038.1
Biopolymer transport protein ExbD.
 
 
 0.927
SMC49967.1
Biopolymer transport protein ExbB.
 
 
 0.906
SMD10030.1
Biopolymer transport protein ExbB.
 
 
 0.906
SMD14586.1
Outer membrane cobalamin receptor protein.
 
 
 
 0.906
SMD10056.1
Vitamin B12 transporter.
 
 
 
 0.894
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.