SMD05264.1 protein (Sporomusa malonica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SMD05264.1

Methyl-accepting chemotaxis sensory transducer with Cache sensor. (670 aa)

Predicted Functional Partners:

SMC89335.1

0.984

SMC97808.1

0.983

SMC65624.1

0.964

SMC65633.1

0.963

SMD00803.1

0.963

SMC97871.1

0.957

SMC72414.1

0.952

SMC91430.1

0.952

SMC97882.1

0.944

SMC89330.1

0.935

Your Current Organism:

Sporomusa malonica

NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SMC65624.1	SMC65633.1	SAMN04488500_106206	SAMN04488500_106207	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.997
SMC65624.1	SMC89330.1	SAMN04488500_106206	SAMN04488500_11213	Purine-binding chemotaxis protein CheW.	Response regulator receiver domain-containing protein.	0.993
SMC65624.1	SMC89335.1	SAMN04488500_106206	SAMN04488500_11215	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.997
SMC65624.1	SMC91430.1	SAMN04488500_106206	SAMN04488500_11329	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, response regulator CheV.	0.848
SMC65624.1	SMC97808.1	SAMN04488500_106206	SAMN04488500_11671	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.994
SMC65624.1	SMC97871.1	SAMN04488500_106206	SAMN04488500_11679	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.987
SMC65624.1	SMD00803.1	SAMN04488500_106206	SAMN04488500_11838	Purine-binding chemotaxis protein CheW.	Two-component system, chemotaxis family, sensor kinase CheA.	0.988
SMC65624.1	SMD05264.1	SAMN04488500_106206	SAMN04488500_12128	Purine-binding chemotaxis protein CheW.	Methyl-accepting chemotaxis sensory transducer with Cache sensor.	0.964
SMC65633.1	SMC65624.1	SAMN04488500_106207	SAMN04488500_106206	Two-component system, chemotaxis family, sensor kinase CheA.	Purine-binding chemotaxis protein CheW.	0.997
SMC65633.1	SMC72414.1	SAMN04488500_106207	SAMN04488500_107192	Two-component system, chemotaxis family, sensor kinase CheA.	CheW protein.	0.988
SMC65633.1	SMC89330.1	SAMN04488500_106207	SAMN04488500_11213	Two-component system, chemotaxis family, sensor kinase CheA.	Response regulator receiver domain-containing protein.	0.894
SMC65633.1	SMC89335.1	SAMN04488500_106207	SAMN04488500_11215	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, sensor kinase CheA.	0.905
SMC65633.1	SMC91430.1	SAMN04488500_106207	SAMN04488500_11329	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, response regulator CheV.	0.994
SMC65633.1	SMC97808.1	SAMN04488500_106207	SAMN04488500_11671	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, CheB/CheR fusion protein.	0.998
SMC65633.1	SMC97871.1	SAMN04488500_106207	SAMN04488500_11679	Two-component system, chemotaxis family, sensor kinase CheA.	Two-component system, chemotaxis family, sensor kinase CheA.	0.675
SMC65633.1	SMC97882.1	SAMN04488500_106207	SAMN04488500_11680	Two-component system, chemotaxis family, sensor kinase CheA.	Purine-binding chemotaxis protein CheW.	0.987
SMC65633.1	SMD05264.1	SAMN04488500_106207	SAMN04488500_12128	Two-component system, chemotaxis family, sensor kinase CheA.	Methyl-accepting chemotaxis sensory transducer with Cache sensor.	0.963
SMC72414.1	SMC65633.1	SAMN04488500_107192	SAMN04488500_106207	CheW protein.	Two-component system, chemotaxis family, sensor kinase CheA.	0.988
SMC72414.1	SMC89330.1	SAMN04488500_107192	SAMN04488500_11213	CheW protein.	Response regulator receiver domain-containing protein.	0.993
SMC72414.1	SMC89335.1	SAMN04488500_107192	SAMN04488500_11215	CheW protein.	Two-component system, chemotaxis family, sensor kinase CheA.	0.997