STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD05938.1Stage V sporulation protein D (sporulation-specific penicillin-binding protein). (695 aa)    
Predicted Functional Partners:
SMD05915.1
Cell division-specific peptidoglycan biosynthesis regulator FtsW; Belongs to the SEDS family.
 
 0.984
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
 
 
 0.975
SMD09142.1
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.968
SMC97418.1
Penicillin-binding protein 1A.
 
 0.965
rodA
Rod shape determining protein RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
 0.961
SMD05881.1
Cell division protein FtsQ; Essential cell division protein.
 
 
 0.945
SMC94820.1
Penicillin-binding protein 1A.
 
0.942
SMC55748.1
Penicillin-binding protein 1A.
 
0.941
SMC55965.1
Cell division protein FtsW, lipid II flippase; Belongs to the SEDS family.
 
 0.940
SMC55972.1
Serine/threonine protein phosphatase PrpC.
  
 
 0.939
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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