STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD12679.1Putative sugar diacid recognition. (283 aa)    
Predicted Functional Partners:
SMC97808.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
 
 0.985
SMC89335.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.984
SMC65633.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.961
SMD00803.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.961
SMC97871.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.960
SMC65624.1
Purine-binding chemotaxis protein CheW.
 
 0.956
SMC72414.1
CheW protein.
 
 0.956
SMC97882.1
Purine-binding chemotaxis protein CheW.
 
 0.952
SMC91430.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.946
SMC89330.1
Response regulator receiver domain-containing protein.
 
 0.943
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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