STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMD17060.1Hypothetical protein. (352 aa)    
Predicted Functional Partners:
SMC93373.1
Cytochrome c-type biogenesis protein CcmF.
  
 
 0.942
SMC62357.1
Tetratricopeptide repeat-containing protein.
  
 0.764
SMC87368.1
Tetratricopeptide repeat-containing protein.
  
 0.764
ribBA
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.665
SMC31728.1
Methyl-accepting chemotaxis protein.
  
  0.651
SMC40778.1
Methyl-accepting chemotaxis protein.
  
  0.651
SMC67571.1
Methyl-accepting chemotaxis protein.
  
  0.651
SMC92268.1
Methyl-accepting chemotaxis protein.
  
  0.651
SMC91052.1
Methyl-accepting chemotaxis protein.
  
  0.651
SMC99372.1
Methyl-accepting chemotaxis protein.
  
  0.651
Your Current Organism:
Sporomusa malonica
NCBI taxonomy Id: 112901
Other names: ATCC 49684, DSM 5090, S. malonica, strain WoG12
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