STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO33417.1Competence protein ComEA. (203 aa)    
Predicted Functional Partners:
SEO33381.1
Competence protein ComEC.
 
  
 0.932
SEO35267.1
Type II secretion system protein E (GspE).
  
  
 0.897
SEO35197.1
Type IV pilus assembly protein PilC.
  
  
 0.893
SEO35119.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
  
  
 0.801
SEO33348.1
DNA polymerase III, delta subunit.
     
 0.786
SEP40286.1
Single-strand DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.
 
  
 0.776
SEO71425.1
comF family protein.
  
  
 0.759
SEO35069.1
Hypothetical protein.
  
  
 0.710
SEO34987.1
Hypothetical protein.
  
  
 0.697
SEO47997.1
4-alpha-glucanotransferase; Belongs to the glycosyl hydrolase 13 family.
    
 0.676
Your Current Organism:
Propionispora vibrioides
NCBI taxonomy Id: 112903
Other names: DSM 13305, JCM 17185, P. vibrioides, Propionispora vibrioides Biebl et al. 2001, strain FKBS1
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