STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO36115.1Stage V sporulation protein AE. (117 aa)    
Predicted Functional Partners:
SEO36156.1
Stage V sporulation protein AD.
 
  
 0.973
SEO35978.1
Stage V sporulation protein AF.
 
   
 0.950
SEO36198.1
Stage V sporulation protein AC.
 
  
0.902
SEO36337.1
Stage II sporulation protein AB (anti-sigma F factor).
 
     0.840
SEO36307.1
RNA polymerase, sigma subunit, RpoX/SigF; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.831
SEO36694.1
RNA polymerase, sigma 29 subunit, SigE; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.821
SEO33274.1
Spore protease.
  
  
 0.807
SEO93668.1
Spore germination protein KA.
  
  
 0.804
SEP10967.1
Spore germination protein KA.
  
  
 0.803
SEP43989.1
Spore germination protein KA.
  
  
 0.803
Your Current Organism:
Propionispora vibrioides
NCBI taxonomy Id: 112903
Other names: DSM 13305, JCM 17185, P. vibrioides, Propionispora vibrioides Biebl et al. 2001, strain FKBS1
Server load: low (14%) [HD]