STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEO60034.1Type II and III secretion system protein; Belongs to the bacterial secretin family. (473 aa)    
Predicted Functional Partners:
SEP36494.1
Tfp pilus assembly protein PilF.
  
 
 0.843
SEP06507.1
Transcriptional regulatory protein, C terminal.
  
  
 0.741
SEO35267.1
Type II secretion system protein E (GspE).
 
  
 0.699
SEO35197.1
Type IV pilus assembly protein PilC.
 
  
 0.693
SEO81170.1
Flagellar motor switch protein FliN/FliY.
  
  
 0.692
SEP39577.1
TPR repeat-containing protein.
  
 
 0.674
SEO30718.1
FHA domain-containing protein.
  
  
 0.669
SEO30745.1
FHA domain-containing protein.
  
  
 0.669
SEP31676.1
Tfp pilus assembly protein PilF.
  
 
 0.644
SEP41222.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
 
 0.644
Your Current Organism:
Propionispora vibrioides
NCBI taxonomy Id: 112903
Other names: DSM 13305, JCM 17185, P. vibrioides, Propionispora vibrioides Biebl et al. 2001, strain FKBS1
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