STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP05063.1DNA-binding transcriptional regulator, PadR family. (119 aa)    
Predicted Functional Partners:
SEP37846.1
RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.683
SEO63346.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.625
SEO63973.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
  
 0.625
SEP05097.1
Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily.
     
 0.511
SEP47934.1
L-threonine ammonia-lyase.
    
  0.511
SEP05122.1
Aromatic acid exporter family member 1.
     
 0.493
SEP05032.1
Protein of unknown function.
       0.452
SEP29795.1
BFD-like [2Fe-2S] binding domain-containing protein.
 
    0.409
SEO71666.1
ATP-binding cassette, subfamily F, member 3.
 
  
 0.401
Your Current Organism:
Propionispora vibrioides
NCBI taxonomy Id: 112903
Other names: DSM 13305, JCM 17185, P. vibrioides, Propionispora vibrioides Biebl et al. 2001, strain FKBS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.