STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP39614.1DNA-binding transcriptional regulator, AcrR family. (196 aa)    
Predicted Functional Partners:
SEP39623.1
Pyruvate, water dikinase.
 
   
 0.698
pth
peptidyl-tRNA hydrolase, PTH1 family; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.583
SEP43683.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
    
 0.540
SEP44156.1
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
   
 0.521
SEP38528.1
Cyclopropane-fatty-acyl-phospholipid synthase.
 
  
 0.500
SEO33883.1
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
   
 
 0.493
hemC
Hydroxymethylbilane synthase; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps.
     
 0.486
SEO56975.1
[acyl-carrier-protein] S-malonyltransferase.
    
 0.483
SEP25106.1
Methyltransferase domain-containing protein.
 
  
 0.471
SEP41436.1
Uncharacterized oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 0.459
Your Current Organism:
Propionispora vibrioides
NCBI taxonomy Id: 112903
Other names: DSM 13305, JCM 17185, P. vibrioides, Propionispora vibrioides Biebl et al. 2001, strain FKBS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.