STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_02471COG1596 Periplasmic protein involved in polysaccharide export. (941 aa)    
Predicted Functional Partners:
AJE_02466
Lipopolysaccharide biosynthesis protein.
 
 0.969
AJE_02886
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.939
AJE_02881
COG1596 Periplasmic protein involved in polysaccharide export.
  
  
 
0.897
AJE_02876
Polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; COG3206 Uncharacterized protein involved in exopolysaccharide biosynthesis.
 
 0.779
AJE_02396
COG2148 Sugar transferases involved in lipopolysaccharide synthesis.
  
 
 0.741
AJE_02411
COG0438 Glycosyltransferase.
 
 
 0.683
AJE_02426
Epimerase/dehydratase; COG1086 Predicted nucleoside-diphosphate sugar epimerases.
  
 
 0.663
cpsB
COG0836 Mannose-1-phosphate guanylyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.660
AJE_02871
Protein-tyrosine kinase; COG0305 Replicative DNA helicase.
  
 0.636
AJE_01931
COG0438 Glycosyltransferase.
  
 
 0.593
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.