STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_04465COG3219 Uncharacterized protein conserved in bacteria. (253 aa)    
Predicted Functional Partners:
AJE_04460
COG3220 Uncharacterized protein conserved in bacteria; Belongs to the UPF0276 family.
 
  
 0.990
AJE_04455
Hypothetical protein.
 
  
 0.962
AJE_12393
COG2259 Predicted membrane protein.
  
  
 0.693
AJE_04730
COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog.
  
    0.638
AJE_10829
Sigma-70, region 4 type 2; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.562
AJE_03106
Hypothetical protein; COG0457 FOG: TPR repeat.
 
    0.539
AJE_11044
Sigma-70 factor; COG1595 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; Belongs to the sigma-70 factor family. ECF subfamily.
 
    0.530
AJE_01269
Hypothetical protein.
  
    0.501
AJE_05601
Hypothetical protein; COG4798 Predicted methyltransferase.
  
     0.491
AJE_04470
Hypothetical protein; COG0685 5,10-methylenetetrahydrofolate reductase.
       0.489
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.