STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_04871Glycoside hydrolase family 28 domain-containing protein; COG5434 Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family. (481 aa)    
Predicted Functional Partners:
AJE_04926
GntR family transcriptional regulator; COG2755 Lysophospholipase L1 and related esterases.
 
 0.993
AJE_04916
COG4225 Predicted unsaturated glucuronyl hydrolase involved in regulation of bacterial surface properties, and related proteins.
  
  0.981
AJE_04921
Pectinesterase; COG4677 Pectin methylesterase.
 
  
 0.916
AJE_15519
Pectate lyase.
 
  
 0.881
AJE_04866
COG2721 Altronate dehydratase.
 
     0.866
uxaC
COG1904 Glucuronate isomerase.
 
  
 0.854
kduI
5-keto-4-deoxyuronate isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
     0.852
AJE_07336
COG3866 Pectate lyase.
 
  
 0.750
AJE_00715
Hypothetical protein; COG2755 Lysophospholipase L1 and related esterases.
   
 0.730
AJE_02856
acyl-CoA thioesterase; COG2755 Lysophospholipase L1 and related esterases.
   
 0.730
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.