STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AJE_04881COG1414 Transcriptional regulator. (258 aa)    
Predicted Functional Partners:
AJE_04886
TRAP transporter DctM-like subunit; COG1593 TRAP-type C4-dicarboxylate transport system, large permease component.
 
  
  0.864
AJE_04896
TRAP transporter solute receptor, DctP family protein; COG1638 TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
   
 0.813
AJE_04891
TRAP transporter DctQ-like membrane protein; COG3090 TRAP-type C4-dicarboxylate transport system, small permease component.
 
     0.793
AJE_04876
COG1609 Transcriptional regulators.
     
 0.761
AJE_06766
Hypothetical protein; COG2049 Allophanate hydrolase subunit 1.
  
    0.732
AJE_06771
COG1984 Allophanate hydrolase subunit 2.
  
    0.675
AJE_04866
COG2721 Altronate dehydratase.
 
  
 0.659
AJE_04846
Ribokinase-like domain-containing protein; COG0524 Sugar kinases, ribokinase family.
 
   
 0.641
AJE_14480
COG3508 Homogentisate 1,2-dioxygenase.
    
 0.631
pdhR
COG2186 Transcriptional regulators.
 
  
 0.566
Your Current Organism:
Alishewanella jeotgali
NCBI taxonomy Id: 1129374
Other names: A. jeotgali KCTC 22429, Alishewanella jeotgali KCTC 22429, Alishewanella jeotgali MS1, Alishewanella jeotgali str. KCTC 22429, Alishewanella jeotgali strain KCTC 22429, Alishewanella sp. MS1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.